--- title: "BioCoder trust report" type: "trust-report" slug: "gersteinlab-biocoder" canonical_url: "https://www.graphcanon.com/tools/gersteinlab-biocoder/trust" computed_at: "2026-07-11T23:46:17.751Z" maintenance_label: "Slowing" security_status: "findings" --- # BioCoder trust report _Sourced [trust signals](/glossary/trust-and-signals/trust-signal) from public GitHub metadata and optional dependency [security scans](/glossary/trust-and-signals/security-scan). Not a security guarantee._ ## Maintenance - Label: Slowing (36% recency signal) - Days since last push: 345 - Methodology: github_public_v1 ## Provenance - GitHub repo id: 676849874 - Not a fork - Owner type: Organization - Computed at: 2026-07-11T23:46:17.751Z - Methodology: github_public_v1 ## Security scan - Status: Findings present (0 critical, 0 high, 0 medium, 210 low) · last scan 2026-07-11T23:46:18.221Z ### Findings - **low**: GHSA-2fqr-mr3j-6wp8 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-2vrm-gr82-f7m5 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-3wq7-rqq7-wx6j (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-45c4-8wx5-qw6w (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-4fvr-rgm6-gqmc (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-4m7w-qmgq-4wj5 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-54jq-c3m8-4m76 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-5h86-8mv2-jq9f (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-5m98-qgg9-wh84 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-63hf-3vf5-4wqf (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-63hw-fmq6-xxg2 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-69f9-5gxw-wvc2 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-6jhg-hg63-jvvf (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-6mq8-rvhq-8wgg (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-7gpw-8wmc-pm8g (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-8495-4g3g-x7pr (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-8qpw-xqxj-h4r2 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-9548-qrrj-x5pj (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-966j-vmvw-g2g9 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-9x8q-7h8h-wcw9 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-c427-h43c-vf67 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-fh55-r93g-j68g (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-g3cq-j2xw-wf74 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-g84x-mcqj-x9qq (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-gfw2-4jvh-wgfg (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-hcc4-c3v8-rx92 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-hg6j-4rv6-33pg (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-hpj7-wq8m-9hgp (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-jg22-mg44-37j8 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-jj3x-wxrx-4x23 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-m5qp-6w8w-w647 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-m6qw-4cw2-hm4m (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-mqqc-3gqh-h2x8 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-mwh4-6h8g-pg8w (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-p998-jp59-783m (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-pjjw-qhg8-p2p9 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-q3qx-c6g2-7pw2 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-qvrw-v9rv-5rjx (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-w2fm-2cpv-w7v5 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-xcgm-r5h9-7989 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2023-120 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2023-246 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2023-250 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2023-251 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2024-24 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2024-26 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2026-1097 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2026-1098 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2026-1099 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2026-1100 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2026-1101 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2026-1102 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2026-1103 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2026-1104 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2026-1105 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2026-1106 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2026-1107 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2026-1109 (aiohttp@3.8.4 · requirements.txt) - **low**: PYSEC-2026-237 (aiohttp@3.8.4 · requirements.txt) - **low**: GHSA-248v-346w-9cwc (certifi@2022.12.7 · requirements.txt) - **low**: GHSA-xqr8-7jwr-rhp7 (certifi@2022.12.7 · requirements.txt) - **low**: PYSEC-2023-135 (certifi@2022.12.7 · requirements.txt) - **low**: PYSEC-2024-230 (certifi@2022.12.7 · requirements.txt) - **low**: GHSA-qmgc-5h2g-mvrw (filelock@3.9.0 · requirements.txt) - **low**: GHSA-w853-jp5j-5j7f (filelock@3.9.0 · requirements.txt) - **low**: PYSEC-2026-1374 (filelock@3.9.0 · requirements.txt) - **low**: PYSEC-2026-1375 (filelock@3.9.0 · requirements.txt) - **low**: GHSA-6673-4983-2vx5 (fonttools@4.38.0 · requirements.txt) - **low**: GHSA-768j-98cg-p3fv (fonttools@4.38.0 · requirements.txt) - **low**: PYSEC-2026-1388 (fonttools@4.38.0 · requirements.txt) - **low**: PYSEC-2026-1389 (fonttools@4.38.0 · requirements.txt) - **low**: GHSA-65pc-fj4g-8rjx (idna@3.4 · requirements.txt) - **low**: GHSA-jjg7-2v4v-x38h (idna@3.4 · requirements.txt) - **low**: PYSEC-2024-60 (idna@3.4 · requirements.txt) - **low**: PYSEC-2026-215 (idna@3.4 · requirements.txt) - **low**: GHSA-469j-vmhf-r6v7 (nltk@3.8.1 · requirements.txt) - **low**: GHSA-68j8-pq59-fqgm (nltk@3.8.1 · requirements.txt) - **low**: GHSA-7p94-766c-hgjp (nltk@3.8.1 · requirements.txt) - **low**: GHSA-cgvx-9447-vcch (nltk@3.8.1 · requirements.txt) - **low**: GHSA-gfwx-w7gr-fvh7 (nltk@3.8.1 · requirements.txt) - **low**: GHSA-h8wq-7xc4-p3qx (nltk@3.8.1 · requirements.txt) - **low**: GHSA-jm6w-m3j8-898g (nltk@3.8.1 · requirements.txt) - **low**: GHSA-p4gq-832x-fm9v (nltk@3.8.1 · requirements.txt) - **low**: GHSA-rf74-v2fm-23pw (nltk@3.8.1 · requirements.txt) - **low**: PYSEC-2024-167 (nltk@3.8.1 · requirements.txt) - **low**: PYSEC-2026-2078 (nltk@3.8.1 · requirements.txt) - **low**: PYSEC-2026-2085 (nltk@3.8.1 · requirements.txt) - **low**: PYSEC-2026-597 (nltk@3.8.1 · requirements.txt) - **low**: PYSEC-2026-96 (nltk@3.8.1 · requirements.txt) - **low**: PYSEC-2026-97 (nltk@3.8.1 · requirements.txt) - **low**: PYSEC-2026-98 (nltk@3.8.1 · requirements.txt) - **low**: PYSEC-2026-99 (nltk@3.8.1 · requirements.txt) - **low**: GHSA-f73w-4m7g-ch9x (numexpr@2.8.4 · requirements.txt) - **low**: PYSEC-2023-163 (numexpr@2.8.4 · requirements.txt) - **low**: GHSA-3f63-hfp8-52jq (Pillow@9.4.0 · requirements.txt) - **low**: GHSA-44wm-f244-xhp3 (Pillow@9.4.0 · requirements.txt) - **low**: GHSA-8ghj-p4vj-mr35 (Pillow@9.4.0 · requirements.txt) - **low**: GHSA-j7hp-h8jx-5ppr (Pillow@9.4.0 · requirements.txt) - **low**: GHSA-r73j-pqj5-w3x7 (Pillow@9.4.0 · requirements.txt) - **low**: GHSA-wjx4-4jcj-g98j (Pillow@9.4.0 · requirements.txt) - **low**: PYSEC-2023-175 (Pillow@9.4.0 · requirements.txt) - **low**: PYSEC-2023-227 (Pillow@9.4.0 · requirements.txt) - **low**: PYSEC-2026-165 (Pillow@9.4.0 · requirements.txt) - **low**: PYSEC-2026-1793 (Pillow@9.4.0 · requirements.txt) - **low**: PYSEC-2026-1794 (Pillow@9.4.0 · requirements.txt) - **low**: PYSEC-2026-457 (Pillow@9.4.0 · requirements.txt) - **low**: GHSA-6w46-j5rx-g56g (pytest@7.2.2 · requirements.txt) - **low**: PYSEC-2026-1845 (pytest@7.2.2 · requirements.txt) - **low**: GHSA-9hjg-9r4m-mvj7 (requests@2.28.2 · requirements.txt) - **low**: GHSA-9wx4-h78v-vm56 (requests@2.28.2 · requirements.txt) - **low**: GHSA-gc5v-m9x4-r6x2 (requests@2.28.2 · requirements.txt) - **low**: GHSA-j8r2-6x86-q33q (requests@2.28.2 · requirements.txt) - **low**: PYSEC-2023-74 (requests@2.28.2 · requirements.txt) - **low**: PYSEC-2026-1872 (requests@2.28.2 · requirements.txt) - **low**: PYSEC-2026-1873 (requests@2.28.2 · requirements.txt) - **low**: GHSA-3749-ghw9-m3mg (torch@1.9.0 · requirements.txt) - **low**: GHSA-47fc-vmwq-366v (torch@1.9.0 · requirements.txt) - **low**: GHSA-53q9-r3pm-6pq6 (torch@1.9.0 · requirements.txt) - **low**: GHSA-5pcm-hx3q-hm94 (torch@1.9.0 · requirements.txt) - **low**: GHSA-887c-mr87-cxwp (torch@1.9.0 · requirements.txt) - **low**: GHSA-c678-jfcj-6jmf (torch@1.9.0 · requirements.txt) - **low**: GHSA-f4hp-rmr7-r7v8 (torch@1.9.0 · requirements.txt) - **low**: GHSA-pg7h-5qx3-wjr3 (torch@1.9.0 · requirements.txt) - **low**: GHSA-qfhq-4f3w-5fph (torch@1.9.0 · requirements.txt) - **low**: GHSA-rrmf-rvhw-rf47 (torch@1.9.0 · requirements.txt) - **low**: GHSA-vgrw-7cvw-pwgx (torch@1.9.0 · requirements.txt) - **low**: GHSA-x3gm-94wq-g975 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2022-43015 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2024-250 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2024-251 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2024-252 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2024-259 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2025-191 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2025-198 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2025-203 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2025-204 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2025-205 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2025-206 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2025-207 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2025-208 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2025-209 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2025-41 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2026-139 (torch@1.9.0 · requirements.txt) - **low**: PYSEC-2026-1970 (torch@1.9.0 · requirements.txt) - **low**: GHSA-g7vv-2v7x-gj9p (tqdm@4.64.1 · requirements.txt) - **low**: PYSEC-2026-1976 (tqdm@4.64.1 · requirements.txt) - **low**: GHSA-282v-666c-3fvg (transformers@4.16.2 · requirements.txt) - **low**: GHSA-29pf-2h5f-8g72 (transformers@4.16.2 · requirements.txt) - **low**: GHSA-37mw-44qp-f5jm (transformers@4.16.2 · requirements.txt) - **low**: GHSA-37q5-v5qm-c9v8 (transformers@4.16.2 · requirements.txt) - **low**: GHSA-3863-2447-669p (transformers@4.16.2 · requirements.txt) - **low**: GHSA-4w7r-h757-3r74 (transformers@4.16.2 · requirements.txt) - **low**: GHSA-59p9-h35m-wg4g (transformers@4.16.2 · requirements.txt) - **low**: GHSA-69w3-r845-3855 (transformers@4.16.2 · requirements.txt) - **low**: GHSA-6rvg-6v2m-4j46 (transformers@4.16.2 · requirements.txt) - **low**: GHSA-9356-575x-2w9m (transformers@4.16.2 · requirements.txt) - **low**: GHSA-fpwr-67px-3qhx (transformers@4.16.2 · requirements.txt) - **low**: GHSA-hxxf-235m-72v3 (transformers@4.16.2 · requirements.txt) - **low**: GHSA-jjph-296x-mrcr (transformers@4.16.2 · requirements.txt) - **low**: GHSA-phhr-52qp-3mj4 (transformers@4.16.2 · requirements.txt) - **low**: GHSA-q2wp-rjmx-x6x9 (transformers@4.16.2 · requirements.txt) - **low**: GHSA-qq3j-4f4f-9583 (transformers@4.16.2 · requirements.txt) - **low**: GHSA-qxrp-vhvm-j765 (transformers@4.16.2 · requirements.txt) - **low**: GHSA-rcv9-qm8p-9p6j (transformers@4.16.2 · requirements.txt) - **low**: GHSA-v68g-wm8c-6x7j (transformers@4.16.2 · requirements.txt) - **low**: GHSA-wrfc-pvp9-mr9g (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2023-299 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2023-300 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2023-301 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2024-227 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2024-228 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2024-229 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2025-211 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2025-212 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2025-213 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2025-214 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2025-215 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2025-216 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2025-217 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2025-218 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2025-40 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2026-1977 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2026-1978 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2026-1980 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2026-1981 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2026-1982 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2026-1983 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2026-1984 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2026-1985 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2026-1986 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2026-1987 (transformers@4.16.2 · requirements.txt) - **low**: PYSEC-2026-1988 (transformers@4.16.2 · requirements.txt) - **low**: GHSA-2xpw-w6gg-jr37 (urllib3@1.26.14 · requirements.txt) - **low**: GHSA-34jh-p97f-mpxf (urllib3@1.26.14 · requirements.txt) - **low**: GHSA-38jv-5279-wg99 (urllib3@1.26.14 · requirements.txt) - **low**: GHSA-g4mx-q9vg-27p4 (urllib3@1.26.14 · requirements.txt) - **low**: GHSA-gm62-xv2j-4w53 (urllib3@1.26.14 · requirements.txt) - **low**: GHSA-pq67-6m6q-mj2v (urllib3@1.26.14 · requirements.txt) - **low**: GHSA-qccp-gfcp-xxvc (urllib3@1.26.14 · requirements.txt) - **low**: GHSA-v845-jxx5-vc9f (urllib3@1.26.14 · requirements.txt) - **low**: PYSEC-2023-192 (urllib3@1.26.14 · requirements.txt) - **low**: PYSEC-2023-212 (urllib3@1.26.14 · requirements.txt) - **low**: PYSEC-2026-141 (urllib3@1.26.14 · requirements.txt) - **low**: PYSEC-2026-1994 (urllib3@1.26.14 · requirements.txt) - **low**: PYSEC-2026-1995 (urllib3@1.26.14 · requirements.txt) - **low**: PYSEC-2026-1996 (urllib3@1.26.14 · requirements.txt) - **low**: PYSEC-2026-1998 (urllib3@1.26.14 · requirements.txt) - **low**: PYSEC-2026-1999 (urllib3@1.26.14 · requirements.txt) - **low**: GHSA-jfmj-5v4g-7637 (zipp@3.15.0 · requirements.txt) - **low**: PYSEC-2026-2074 (zipp@3.15.0 · requirements.txt) ## Method and caveats These are heuristics from public GitHub data and optional dependency scans, sourced and dated. "No criticals found on 2026-07-11" is not a guarantee of safety. See the full methodology: [/trust-methodology](/trust-methodology.md). ## Common questions ### Is BioCoder maintained? GraphCanon rates BioCoder "Slowing" (36% maintenance signal from public GitHub metadata, computed today). Last push was 345 days ago. This is a recency heuristic, not a guarantee the project will stay maintained. ### Is BioCoder safe to use? Last scanned today (deps profile). Status: 210 low - 210 low finding(s) in the latest scan. GraphCanon does not claim the project is safe or vulnerability-free; review findings on the trust report. GraphCanon does not certify BioCoder as safe - review maintenance, provenance, and scan findings on this page before adopting. ### Is BioCoder a fork? No. BioCoder is not flagged as a fork in GitHub metadata at the time of the last refresh. ### Does BioCoder have known security vulnerabilities? Last scanned today (deps profile). Status: 210 low - 210 low finding(s) in the latest scan. GraphCanon does not claim the project is safe or vulnerability-free; review findings on the trust report. ### How often is the BioCoder trust report updated? Trust signals refresh on GitHub ingest/refresh cycles and optional dependency/MCP scans. This report was computed today (methodology github_public_v1). ### What does GraphCanon never claim about BioCoder? We never publish a composite safety grade, pen-test endorsement, or "verified secure" label for BioCoder. Signals are sourced heuristics with explicit limits - see [trust methodology](/trust-methodology). ### How does GraphCanon assess trust for BioCoder? Signals are sourced from public GitHub metadata and optional dependency/MCP manifest scans, each tagged with methodology version and computed date. GraphCanon does not publish a composite safety grade. Read [trust methodology](/trust-methodology) for full scope and limits. --- **Machine-readable endpoints** - JSON: [`/api/graphcanon/tools/gersteinlab-biocoder/trust`](/api/graphcanon/tools/gersteinlab-biocoder/trust) - LLM index: [/llms.txt](/llms.txt) - Full corpus: [/llms-full.txt](/llms-full.txt) _GraphCanon - The knowledge graph for AI development. https://www.graphcanon.com/_