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Decision brief
annotateai uses LLMs to automate the annotation of scientific and medical papers. It's open-source under Apache-2.0, categorized as an LLM Framework and Data & Retrieval tool.
Good fit when
- Need automated annotations for large volumes of scientific or medical papers
- Have access to LLM capabilities through Python integration
Avoid when
- Require detailed, custom annotations that go beyond general LLML capabilities
- Situations where regulatory approval necessitates human review over machine-generated annotations
Observed Jul 12, 2026 · Source: enrich:decision_facts
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Maintenance and security
Full trust report- Maintenance
- Slowing (110d since push)
- As of today
- Provenance
- Not a fork · Organization account
- As of today
- Security (OSV)
- No lockfile
- As of 1mo
Public GitHub metadata and optional OSV scans. Signals, not a guarantee. Trust methodology.
Install
pip install annotateaiSimilar tools
Same-category neighbours. No typed graph edges are catalogued for this tool yet.
Evidence and technical details
Sourced facts, taxonomy, compatibility claims, README excerpt, and machine-readable endpoints.
Overview
Neuml's AnnotateAI aims to automate the annotation of scientific and medical papers through Large Language Models (LLMs).
Capability facts
- Languages
- python
Source: github.language+pyproject.toml · Aug 23, 2026
Categories
Compatibility
Sourced claims from the README excerpt - not unsourced marketing copy.
Source: README excerpt (regex_v1, Aug 23, 2026)
Python 3.10+ is supported. Using a Python [virtual environment](https://docs.python.org/3/lSource link
Tags
README
Installation
The easiest way to install is via pip and PyPI
pip install annotateai
Python 3.10+ is supported. Using a Python virtual environment is recommended.
annotateai can also be installed directly from GitHub to access the latest, unreleased features.
pip install git+https://github.com/neuml/annotateai
Run pip install llama-cpp-python to enable
annotate = Annotate( "unsloth/gemma-4-E2B-it-GGUF/gemma-4-E2B-it-Q4_K_M.gguf" )
---
## Docker Web Application
[neuml/annotateai](https://hub.docker.com/r/neuml/annotateai) is a web application available on Docker Hub.
This can be run with the default settings as follows.
docker run -d --gpus=all -it -p 8501:8501 neuml/annotateai
The LLM can also be set via ENV parameters.
docker run -d --gpus=all -it -p 8501:8501 -e LLM=unsloth/gemma-4-E4B-it-GGUF/gemma-4-E4B-it-Q4_K_M.gguf -e MAXLENGTH=10000 -e n_ctx=4096 neuml/annotateai
The code for this application can be found in the [app folder](https://github.com/neuml/annotateai/tree/master/app).
For agents
This page has a .md twin and JSON over the API.